PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Home  BLAST  Prediction  RegMap  ATRM  Download  Help  About  Links
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo3G0015700
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family MYB
Protein Properties Length: 306aa    MW: 33582.6 Da    PI: 6.3931
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo3G0015700genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.99.8e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +lv +++++G+g+W++++   g+ R+ k+c++rw +yl
   Spipo3G0015700 14 KGPWTPEEDIILVSYIQEHGPGNWRSVPTNAGLMRCSKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding47.83.3e-1567112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T++E+ l+v++  +lG++ W++Ia++++  Rt++++k++w+++l
   Spipo3G0015700  67 RGNFTPQEEGLIVQLQGLLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 112
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.2E-24564IPR009057Homeodomain-like
PROSITE profilePS5129425.06965IPR017930Myb domain
SuperFamilySSF466891.47E-3011108IPR009057Homeodomain-like
SMARTSM007171.3E-131363IPR001005SANT/Myb domain
PfamPF002491.8E-161461IPR001005SANT/Myb domain
CDDcd001678.59E-121661No hitNo description
Gene3DG3DSA:1.10.10.604.0E-2465117IPR009057Homeodomain-like
SMARTSM007171.1E-1366114IPR001005SANT/Myb domain
PROSITE profilePS5129419.95266116IPR017930Myb domain
PfamPF002498.1E-1467112IPR001005SANT/Myb domain
CDDcd001678.15E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009416Biological Processresponse to light stimulus
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010118Biological Processstomatal movement
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MGRPPCCEKV GVKKGPWTPE EDIILVSYIQ EHGPGNWRSV PTNAGLMRCS KSCRLRWTNY  60
LRPGIKRGNF TPQEEGLIVQ LQGLLGNRWA AIASYLPQRT DNDIKNYWNT HLKKKIKRLQ  120
AASGPSLALD STADTHPGRL IDSGGGTITN SDGNPALPRA GHCSSTYASS AENISRLLEG  180
WIRPSPKASG KPMQEWECNG SRNHGPVPLG GLQVGEDQGS CSILSQEDLD SLLSIENVAW  240
DESSTDYRHC GAHRENLVQA EMEQRLESQR PPLSLLEGWL LDETSVQDDR LTDTSPSVCI  300
NARCD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A6e-26141164105MYB PROTO-ONCOGENE PROTEIN
1h8a_C6e-261411627128MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00132DAPTransfer from AT1G08810Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002319734.11e-109hypothetical protein POPTR_0013s06390g
SwissprotP813928e-83MYB06_ANTMA; Myb-related protein 306
TrEMBLB9I6601e-109B9I660_POPTR; Uncharacterized protein
STRINGPOPTR_0013s06390.11e-109(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22938296
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08810.12e-93myb domain protein 60